PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_609A01BD5.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 179aa    MW: 19198 Da    PI: 8.7488
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_609A01BD5.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.13e-202067249
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                           rie++  rqv fskRr+g++KK +EL vLC+aeva ++fs+ gk + +
  Traes_6DL_609A01BD5.1 20 RIESEEARQVCFSKRRAGLFKKVSELAVLCGAEVAAVVFSPAGKAFSF 67
                           8******************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.62E-281180IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.3241171IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-331170IPR002100Transcription factor, MADS-box
CDDcd002651.18E-361279No hitNo description
PRINTSPR004045.3E-201333IPR002100Transcription factor, MADS-box
PfamPF003192.8E-252067IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-203348IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-204869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MSMAPKRKLS MGRQKIEIRR IESEEARQVC FSKRRAGLFK KVSELAVLCG AEVAAVVFSP  60
AGKAFSFGHP SVEAILDRFI PSAAQLGVAG AGAGLGAAGD RNLAELNRQY GQLREQLEAE  120
KARKERAEEA MAKERAKGSP AAAWLDADLR DLGEEELMAF AAALADVQAA VSERANQVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-161179169MEF2C
5f28_B2e-161179169MEF2C
5f28_C2e-161179169MEF2C
5f28_D2e-161179169MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199886.11e-119agamous-like MADS-box protein AGL29
TrEMBLA0A3B6QIX91e-120A0A3B6QIX9_WHEAT; Uncharacterized protein
STRINGTraes_6DL_609A01BD5.11e-122(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-26AGAMOUS-like 61
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]