PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_7B2EC9B84.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 188aa    MW: 19632.1 Da    PI: 9.1217
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_7B2EC9B84.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-19108159156
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                            s+++GVr+++ +g+W+AeIrdp     +   r +lg+f+ta +Aa+a++ a+++++g+
  Traes_6DL_7B2EC9B84.1 108 SKFRGVRQRS-WGKWAAEIRDP-----HraVRKWLGTFDTAVDAARAYDLAALEFRGH 159
                            79*****999.**********7.....338**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-12108159IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-22108167IPR016177DNA-binding domain
CDDcd000182.40E-29108168No hitNo description
Gene3DG3DSA:3.30.730.101.7E-30109167IPR001471AP2/ERF domain
SMARTSM003801.7E-32109172IPR001471AP2/ERF domain
PROSITE profilePS5103223.512109166IPR001471AP2/ERF domain
PRINTSPR003672.0E-12110121IPR001471AP2/ERF domain
PRINTSPR003672.0E-12148168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MAPRLERGGS GFQLPNSELE DSLFLRALIS VVNGDAVVPT LHLEPSSTPH FAAAVPACAS  60
CGVDGCIGCM FAAAAAPAGS SSEGEGCSAA SFVKGGGVGK ITRRRSRSKF RGVRQRSWGK  120
WAAEIRDPHR AVRKWLGTFD TAVDAARAYD LAALEFRGHR ARLNFPDAAA TPPSSASVSD  180
SSWAAAQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-18110166663ATERF1
3gcc_A3e-18110166663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3719430.0AK371943.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143L06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193074.11e-132ethylene-responsive transcription factor ERF109-like
TrEMBLA0A3B6QII31e-131A0A3B6QII3_WHEAT; Uncharacterized protein
STRINGTraes_6DL_7B2EC9B84.11e-132(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.13e-16ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]