PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_88DFCF552.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 366aa    MW: 38192.4 Da    PI: 8.276
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_88DFCF552.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00063145167123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            y+C+ C+k+F++   L  H  +H
  Traes_6DL_88DFCF552.1 145 YECKTCNKCFPTFQALGGHRASH 167
                            99**********99999998887 PP
2zf-C2H211.60.00086252274123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C++Cg  F +   L  H+r+H
  Traes_6DL_88DFCF552.1 252 HECSICGAEFASGQALGGHMRRH 274
                            78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.47E-8144167No hitNo description
PfamPF139122.2E-11144169IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.097145172IPR007087Zinc finger, C2H2
SMARTSM003550.094145167IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280147167IPR007087Zinc finger, C2H2
SuperFamilySSF576671.47E-8247274No hitNo description
PfamPF139121.6E-12251275IPR007087Zinc finger, C2H2
PROSITE profilePS501579.577252274IPR007087Zinc finger, C2H2
SMARTSM003550.016252274IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280254274IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MQASAMELVL FREEGTVDDR LQQHGGAVVK RKRTKRPRHQ TPPVAAMACS SASSSESTTT  60
EEEDMAHCLI LLAQGAAPPG VVVDSRPPPA TVPLEARQGT PSLPPPGPLP APAVMSTTKT  120
ERYTSRKYTE AATTADGVRA GFYVYECKTC NKCFPTFQAL GGHRASHKKP RLAGADDDTA  180
ANATSVAIAK LSKPPSTKTA TPPLVQIMTT ASPPPPPPPQ LDAGPDVTTV LSLNNGGSAV  240
CNAVNTNRLR VHECSICGAE FASGQALGGH MRRHRPLHAP ADRTIATTAV TTIPASTTKK  300
DSTPAGINLE LDLNLPAPSD EECVSHPPPP PPPSAAPVVL GLGPFDSGKK RLMLTAASAA  360
LVDCHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039895e-73AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06.
GenBankAP0040265e-73AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04.
GenBankAP0149585e-73AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126105e-73CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158166.10.0zinc finger protein ZAT5-like
TrEMBLA0A3B6QLA30.0A0A3B6QLA3_WHEAT; Uncharacterized protein
STRINGTraes_6DL_88DFCF552.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.12e-36C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]