PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6DL_8ECBBC867.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Nin-like

Protein Properties

Length: 205aa MW: 23778.8 Da PI: 9.2985

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6DL_8ECBBC867.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80.3	2e-25	96	143	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +s++++s++F +pik+AA +L+v+lT+LKr+CR++GI+RWPhRk+ksl Traes_6DL_8ECBBC867.1 96 LSFQQVSRCFCMPIKQAAEKLNVGLTLLKRQCRELGIPRWPHRKLKSL 143 89********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.824	80	164	IPR003035	RWP-RK domain
Pfam	PF02042	7.1E-21	96	143	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MYLLRQWSFE YLLEISLFYP TQHLCDTSTS STTTTTSQSC LLQDQQELEA RLEVHIMSLL 60 AALEGEHHGG EKVMKGEVGR DAGEKKRNGP EEKPLLSFQQ VSRCFCMPIK QAAEKLNVGL 120 TLLKRQCREL GIPRWPHRKL KSLETLIKNA QELGKPMIEV EMLRRKKKLI EERPGHIELD 180 EVTKVLRQAC FKEKFKRRRL MAMEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	162	168	LRRKKKL
2	163	168	RRKKKL
3	195	199	KRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014756209.2	2e-61	protein RKD1
Swissprot	Q9FGD1	8e-29	RKD3_ARATH; Protein RKD3
TrEMBL	A0A3B6QL42	1e-148	A0A3B6QL42_WHEAT; Uncharacterized protein
TrEMBL	A0A453PK91	1e-148	A0A453PK91_AEGTS; Uncharacterized protein
STRING	Traes_6DL_8ECBBC867.1	1e-149	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	7e-31	RWP-RK domain-containing protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]