PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6DL_9097A97D9.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 108aa MW: 12312.1 Da PI: 7.7537

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6DL_9097A97D9.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.2	5.5e-18	19	98	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ e+GF vr s+s+ + +++ +++ vC + gk+ +e++k + r+gC+a++++ + +d+ w++++ +++HnH+l+ Traes_6DL_9097A97D9.1 19 EFYNLYSWECGFGVRLSSSRMN-VDRKRCMQEIVCACAGKPLKENTK---------SARCGCTAMIRLLRASDNGWYISEHKEDHNHPLS 98 6**************99998.66668899*****9997655.........9*****************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-14	19	98	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 108 aa Download sequence Send to blast
MVVNPTVGAS FDSIDEAYEF YNLYSWECGF GVRLSSSRMN VDRKRCMQEI VCACAGKPLK 60 ENTKSARCGC TAMIRLLRAS DNGWYISEHK EDHNHPLSLT CGEKMHWK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020184225.1	6e-75	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A446X4Y4	1e-64	A0A446X4Y4_TRITD; Uncharacterized protein
STRING	Traes_6DL_9097A97D9.1	2e-77	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	4e-16	FAR1-related sequence 8

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]