PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6DL_A07757F7A.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Dof

Protein Properties

Length: 393aa MW: 40305.4 Da PI: 8.3027

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6DL_A07757F7A.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.7e-39	80	141	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 keka++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Traes_6DL_A07757F7A.2 80 KEKAINCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 141 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	73	128	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.8E-33	82	138	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.901	84	138	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	86	122	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MDAAQWHQQQ GLGLVKPMEE MIMAGNPNPN PNPNGNPNPQ PAPPSGAEAQ RAPVPGPPAG 60 GAGAAAGTGS TERKAARPQK EKAINCPRCN STNTKFCYYN NYSLQQPRYF CKTCRRYWTE 120 GGSLRNVPVG GGSRKNKRSS SSVVSSAAGA VSTSGAASGT VPIGGMAAKN PKLMHEGAHD 180 LNLAFPHHHG RVLHPSEFAA FPSLESSSVC NPGGTMAANG AGGGRGMGAF SAMELLRSTG 240 CYVPMPQVQL GMPPEYAAAG FALGEFRMPL QHQQHHQQQQ QQQHQQHQQQ VQNMLGFSLD 300 TGGGGDAGGY GAGLQGAQES ATGRMLFPFE DLKPGTNAGG GGASGGDQFE HSKDQGGGGG 360 GGHETLGFWN NSMIGNGSSN DAGGGGGGGG GSW

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MDAAQWHQQQ GLGLVKPMEE MIMAGNPNPN PNPNGNPNPQ PAPPSGAEAQ RAPVPGPPAG  60
GAGAAAGTGS TERKAARPQK EKAINCPRCN STNTKFCYYN NYSLQQPRYF CKTCRRYWTE  120
GGSLRNVPVG GGSRKNKRSS SSVVSSAAGA VSTSGAASGT VPIGGMAAKN PKLMHEGAHD  180
LNLAFPHHHG RVLHPSEFAA FPSLESSSVC NPGGTMAANG AGGGRGMGAF SAMELLRSTG  240
CYVPMPQVQL GMPPEYAAAG FALGEFRMPL QHQQHHQQQQ QQQHQQHQQQ VQNMLGFSLD  300
TGGGGDAGGY GAGLQGAQES ATGRMLFPFE DLKPGTNAGG GGASGGDQFE HSKDQGGGGG  360
GGHETLGFWN NSMIGNGSSN DAGGGGGGGG GSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ276357	0.0	AJ276357.1 Hordeum vulgare mRNA for dof zinc finger protein (sed gene).
GenBank	AJ312297	0.0	AJ312297.1 Hordeum vulgare sed gene for dof zinc finger protein, exons 1-2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020164857.1	0.0	dof zinc finger protein DOF1.8-like isoform X2
Refseq	XP_020164858.1	0.0	dof zinc finger protein DOF1.8-like isoform X2
Refseq	XP_020164859.1	0.0	dof zinc finger protein DOF1.8-like isoform X2
Swissprot	B9F1L8	1e-122	DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBL	A0A453P9K6	0.0	A0A453P9K6_AEGTS; Uncharacterized protein
STRING	Traes_6DL_A07757F7A.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	4e-30	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]