PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6DL_C27CEED76.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Trihelix

Protein Properties

Length: 358aa MW: 39021.6 Da PI: 5.5285

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6DL_C27CEED76.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.2	1.2e-14	6	87	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W++ + +Li+a e+ +l+rg+l+ p+W+ev++++ ++ g+++ s +qCk++++ l+k+yk +k+ + + ++p+fd+l+ Traes_6DL_C27CEED76.1 6 WSDGATSTLIDAWGERFVALGRGSLRHPQWQEVAEVVsSRDGYSKppkSDVQCKNRIDTLKKKYKVEKAKSDS-------SWPFFDRLD 87 ***********************************87889976333778***********9998886.......5***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.0E-23	4	88	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
SREDAWSDGA TSTLIDAWGE RFVALGRGSL RHPQWQEVAE VVSSRDGYSK PPKSDVQCKN 60 RIDTLKKKYK VEKAKSDSSW PFFDRLDFLL APVQKLLGNS GGAAGNSGSS NPSNRSTAPM 120 APRVNFPQRT RTAFPSSGMK RRLPSPPQAS ASSESSDGFP PEPLAEAVNG KRQRLEESAN 180 GADSSDRAQG LRELAQAIRR LGETYERVES SKGEHELLME RNRLDAAREL EDQRVQFFLK 240 MQMEISKANN GAPLAVPLAA AAMVGNSAST AEDGDSPATA DGNGPRRASM ATDDMASSNH 300 HVRYRVKDDR HHHASQRPSY QYNQNNVGAA DTGGIGSGSD SGNKEEEEEM EDEEEESQ

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

SREDAWSDGA TSTLIDAWGE RFVALGRGSL RHPQWQEVAE VVSSRDGYSK PPKSDVQCKN  60
RIDTLKKKYK VEKAKSDSSW PFFDRLDFLL APVQKLLGNS GGAAGNSGSS NPSNRSTAPM  120
APRVNFPQRT RTAFPSSGMK RRLPSPPQAS ASSESSDGFP PEPLAEAVNG KRQRLEESAN  180
GADSSDRAQG LRELAQAIRR LGETYERVES SKGEHELLME RNRLDAAREL EDQRVQFFLK  240
MQMEISKANN GAPLAVPLAA AAMVGNSAST AEDGDSPATA DGNGPRRASM ATDDMASSNH  300
HVRYRVKDDR HHHASQRPSY QYNQNNVGAA DTGGIGSGSD SGNKEEEEEM EDEEEESQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK363202	0.0	AK363202.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013H02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020172601.1	0.0	trihelix transcription factor ASIL1-like
TrEMBL	A0A3B6QH41	0.0	A0A3B6QH41_WHEAT; Uncharacterized protein
STRING	Traes_6DL_C27CEED76.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2404	30	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11100.1	3e-41	sequence-specific DNA binding transcription factors

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]