PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_DB1546316.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 474aa    MW: 50651.2 Da    PI: 10.0234
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_DB1546316.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.45.7e-32291344255
                G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Traes_6DL_DB1546316.1 291 PRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 344
                            9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.3E-29288344IPR009057Homeodomain-like
SuperFamilySSF466893.4E-15289345IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-23291345IPR006447Myb domain, plants
PfamPF002492.8E-7292343IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
KGAHGVWTKR PIYIFHPRPA TSKQQVTLAS FSHNTSKQTL LSFTIPSPQL SLLLPSLSSS  60
PPPSSLPARN LPSSAPQFRP SPTSNLWPTL SISLGSHKST AAADITPLAL RQLREGSMEL  120
FPSHPDLQLQ LQISPPPATK PMDLGFWKRA LDTTAAAAAA ATTAASAGAT FAPPSIARTH  180
PSVPAAAGGG FHAAHYGAAD GHLGGLQFLQ HTQPILHEVQ DLAAMKPIRG IPVYNTSQSL  240
PFLQSQLHHH NYHHQHCYDA IGGAAGGPRS PGKVGALRLA APPAKRNSRA PRMRWTTSLH  300
ARFVHAVELL GGHERATPKS VLELMDVKDL TLAHVKSHLQ MYRTIKTTDH KPAAASSYGQ  360
AKTIIDIPDD SSFDIANTSG SESSVQQSNL DGNEHGSNMC ALWSNNSSRG AWSFHGKSRS  420
DANPGDIKSF EDVQSQCPNV VADDAADLMS APFRLSELVV GAKKPNLDFT LGRM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-16292346458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-16292346458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-16292346357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16292346357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16292346357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16292346357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-16292346458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-16292346458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-16292346458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-16292346458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-16292346458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-16292346458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0369111e-74BT036911.1 Zea mays full-length cDNA clone ZM_BFb0147F05 mRNA, complete cds.
GenBankKJ7268291e-74KJ726829.1 Zea mays clone pUT3369 G2-like transcription factor (GLK47) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156179.10.0probable transcription factor KAN2 isoform X1
TrEMBLA0A453PBP50.0A0A453PBP5_AEGTS; Uncharacterized protein
STRINGTraes_6DL_DB1546316.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94383445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17695.18e-42G2-like family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]