PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_E7910DD23.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 444aa    MW: 48011.6 Da    PI: 4.5937
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_E7910DD23.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix106.91.3e-33184269187
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                            rW+k+ev+aLi++r e++e+ ++  +k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a
  Traes_6DL_E7910DD23.2 184 RWPKEEVHALIQLRMEKDEHCQDMGAKGPLWEDISAGMRRIGYNRSSKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLDA 269
                            8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.712177241IPR017877Myb-like domain
SMARTSM007170.003181243IPR001005SANT/Myb domain
CDDcd122035.92E-26183248No hitNo description
Gene3DG3DSA:1.10.10.607.9E-4183240IPR009057Homeodomain-like
PfamPF138377.6E-22184270No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MATAATILPD PRPLAMAPAY PGAVLPDLSL SSNSESESDD ESDDEEDQAD GGGGRSNESM  60
MALFEGMIKQ ITEKQDATQR LFLETLEKWE ADRTAREEAW RRQELARISR EREQHARERA  120
AAAARDAALI AFLQRVGGSS VLPTPMPAHT APHPDAPGAS LQLVVAASEE GDRRGGESSA  180
GMSRWPKEEV HALIQLRMEK DEHCQDMGAK GPLWEDISAG MRRIGYNRSS KRCKEKWENI  240
NKYFKKVKES NKRRPEDSKT CPYFHQLDAI YRKKQSAVSN AAAGCSSTAF GNAVGAVNAS  300
ASEQHNPWRE LEGKISNDFD RRHSVGGGSS DAPPGDGEVA AASTVLDAIA TNKKSEDNVM  360
AMESNIQSQQ TEVTATDETD SDDIEGNYSD DGDDDGDEDD KMKYTIEFQK HKEGGSGSAP  420
AAPATAATVV TSSAPTGSTF LAVQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3725500.0AK372550.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3004N20.
GenBankAK3754940.0AK375494.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3095N08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184216.10.0trihelix transcription factor GTL1-like
RefseqXP_020184217.10.0trihelix transcription factor GTL1-like
TrEMBLA0A453P6I10.0A0A453P6I1_AEGTS; Uncharacterized protein
STRINGTraes_6DL_E7910DD23.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-57Trihelix family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]