PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_FD6D63D1A.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 153aa    MW: 15609.4 Da    PI: 9.7183
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_FD6D63D1A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.1e-1775123255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             y+G+r ++ +g+Wv+eIr+p+    + +r++lg++ tae+Aa+a++ a+++l+g
  Traes_6DL_FD6D63D1A.1  75 FYRGIR-CR-NGKWVSEIREPR----KaRRIWLGTYPTAEMAAAAYDVAARALRG 123
                            79***9.66.7*********94....36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.0E-2775137IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-1975131IPR016177DNA-binding domain
PROSITE profilePS5103220.23175131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-2776131IPR001471AP2/ERF domain
CDDcd000186.82E-1776131No hitNo description
PfamPF008478.7E-1076123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MAEQPSATSS SAAAPPQVQV QAAAEPATEL SPGAPASPHS PPVHLGDTVG TTTATALAAT  60
SSGEPSPRST GKHPFYRGIR CRNGKWVSEI REPRKARRIW LGTYPTAEMA AAAYDVAARA  120
LRGSDAVLNF PGAAASRPVP ASASPEDIRA AAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-14721311172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0988964e-93FP098896.1 Phyllostachys edulis cDNA clone: bphylf043a21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159886.11e-102ethylene-responsive transcription factor ERF027-like
SwissprotQ9LYD31e-32DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1D6B2K11e-100A0A1D6B2K1_WHEAT; Uncharacterized protein
TrEMBLA0A453P9Y31e-100A0A453P9Y3_AEGTS; Uncharacterized protein
STRINGTraes_6DL_FD6D63D1A.11e-103(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-24ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]