PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_FD903DBD8.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YA
Protein Properties Length: 78aa    MW: 8707.04 Da    PI: 9.732
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_FD903DBD8.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA46.99.2e-155078129
              CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekk 29
                           +ep+YVNaKQy++Il+RRq+Rak+e+e+k
  Traes_6DL_FD903DBD8.1 50 EEPVYVNAKQYNAILRRRQSRAKAESERK 78
                           69************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5115218.6714978IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.7E-105177IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068605474IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
KCRLNGQIAY PTVDPFYGSL YAAYGGQPMM HPPMVGMHAA AIPLPTDAIE EPVYVNAKQY  60
NAILRRRQSR AKAESERK
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0787551e-119KM078755.1 Triticum aestivum CCAAT-binding transcription factor B (NFYA-B5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186181.11e-48nuclear transcription factor Y subunit A-7-like isoform X2
RefseqXP_020186182.11e-48nuclear transcription factor Y subunit A-7-like isoform X2
SwissprotQ84JP12e-17NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
SwissprotQ9LXV53e-17NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLA0A453JNB11e-47A0A453JNB1_AEGTS; Uncharacterized protein
STRINGTraes_6DL_FD903DBD8.11e-51(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65553853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.27e-20nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  4. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]