PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DS_0E72E2E75.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 241aa    MW: 26763.6 Da    PI: 7.8411
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DS_0E72E2E75.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.44e-1161122454
                            HHHHHHHHHHHHHHHHHHHHHCTSCC.C.............TTS-STCHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPk.as..........kapskKlsKaeiLekAveYIksL 54 
                            ++  rE+ RRd++N++f eL +++ +              +++ Kl+Ka+iL  A++ + +L
  Traes_6DS_0E72E2E75.1  61 SKACREKMRRDKLNDRFLELCSVMNSgKHtgveecsasnPGKNAKLDKASILSDATRMLTQL 122
                            6789**********************666****************************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.36357122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-1158138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.98E-760127No hitNo description
PfamPF000101.5E-861122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1162144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-763128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSDIVFWCIL ESFDYFFLIV HDCCLFDRLG IEDVRGGDSG LGHSNLGKRG RDEPSPSGPK  60
SKACREKMRR DKLNDRFLEL CSVMNSGKHT GVEECSASNP GKNAKLDKAS ILSDATRMLT  120
QLRGETEKLK ESNVNLRETI KDLKAEKNEL RDEKLSLKAE KERLEQQLKA ASAAPTGFAP  180
HMPYPAAFHP AVFPPFAPPY QVPANKGAPV PAAFPGMAMW HWLPPTAMDT TQDPKLWPPN  240
A
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3691720.0AK369172.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2086D01.
GenBankAK3702300.0AK370230.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2107F07.
GenBankAK3735130.0AK373513.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3033I05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158150.11e-152transcription factor ILR3-like
TrEMBLA0A453MVU91e-177A0A453MVU9_AEGTS; Uncharacterized protein
STRINGTraes_6DS_0E72E2E75.11e-180(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81733646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.16e-49bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]