PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DS_17B737547.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 225aa    MW: 24759.7 Da    PI: 8.353
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DS_17B737547.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.6e-19106160256
                            T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            rk+ ++t eq   Lee F+ ++ +s+ e+ +LA++lgL+ rqV vWFqNrRa+ k
  Traes_6DS_17B737547.1 106 RKKLRLTVEQAALLEESFRAHNVLSHGEKHDLARQLGLKPRQVEVWFQNRRARTK 160
                            778899***********************************************98 PP
2HD-ZIP_I/II112.82.1e-36106191186
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                            +kk+rl+ eq++lLEesF++++ L++ +K++lar+Lgl+prqv+vWFqnrRARtk+kq+E d+e L+r++++l+++n+rL++e +e
  Traes_6DS_17B737547.1 106 RKKLRLTVEQAALLEESFRAHNVLSHGEKHDLARQLGLKPRQVEVWFQNRRARTKLKQTELDCELLRRWCERLSDDNARLRRELAE 191
                            69*******************************************************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-1885160IPR009057Homeodomain-like
SuperFamilySSF466892.57E-1890163IPR009057Homeodomain-like
PROSITE profilePS5007117.329102162IPR001356Homeobox domain
SMARTSM003899.3E-16104166IPR001356Homeobox domain
CDDcd000861.92E-13106163No hitNo description
PfamPF000463.5E-16106160IPR001356Homeobox domain
PRINTSPR000313.7E-6133142IPR000047Helix-turn-helix motif
PROSITE patternPS000270137160IPR017970Homeobox, conserved site
PRINTSPR000313.7E-6142158IPR000047Helix-turn-helix motif
SMARTSM003402.2E-12162203IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MSSLTTISSG AMEESQEVEE LVDTRLSLVI GAASRPPPTV LALLPATSPE NEAAARRKRK  60
GQENGAGGVA ATSRQHSKRA KTVHDSSDVD DDDDDGGDAA RSDGTRKKLR LTVEQAALLE  120
ESFRAHNVLS HGEKHDLARQ LGLKPRQVEV WFQNRRARTK LKQTELDCEL LRRWCERLSD  180
DNARLRRELA ETLSSSPAFL SRLTMANDKA VCSSCNKLTS ARMPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104110TRKKLRL
2154162RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189357.11e-162putative homeobox-leucine zipper protein HOX26
SwissprotQ67UX63e-44HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26
TrEMBLA0A3B6QDN61e-161A0A3B6QDN6_WHEAT; Uncharacterized protein
STRINGTraes_6DS_17B737547.11e-162(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83153249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.11e-37HD-ZIP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]