PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DS_2BAD7A60A.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 96aa    MW: 11013.8 Da    PI: 10.3426
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DS_2BAD7A60A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.92.7e-28352251
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           rie+ + rqvtfskRr g+lKKA+EL vLCdaeva+i+fs++g+lyey+s
  Traes_6DS_2BAD7A60A.1  3 RIEDATSRQVTFSKRRSGLLKKAFELGVLCDAEVALIVFSPRGRLYEYAS 52
                           8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.0E-28153IPR002100Transcription factor, MADS-box
CDDcd002657.08E-34152No hitNo description
SuperFamilySSF554557.59E-25157IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.502154IPR002100Transcription factor, MADS-box
PfamPF003193.5E-26350IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-181631IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-183152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MRRIEDATSR QVTFSKRRSG LLKKAFELGV LCDAEVALIV FSPRGRLYEY ASAPEYVRSL  60
TLALDRPLSP RLPLDIRVQS AARFNRLLYH QGQCPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A5e-17354960Myocyte-specific enhancer factor 2A
3mu6_B5e-17354960Myocyte-specific enhancer factor 2A
3mu6_C5e-17354960Myocyte-specific enhancer factor 2A
3mu6_D5e-17354960Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM5028834e-86AM502883.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM18 (WM18 gene).
GenBankDQ5123354e-86DQ512335.1 Triticum aestivum MADS-box transcription factor TaAGL18 (AGL18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153307.12e-30MADS-box protein SOC1-like
SwissprotA2Z9Q73e-27MAD56_ORYSI; MADS-box transcription factor 56
SwissprotP0C5B22e-27MAD56_ORYSJ; MADS-box transcription factor 56
TrEMBLA0A453MQ241e-59A0A453MQ24_AEGTS; Uncharacterized protein
STRINGTraes_6DS_2BAD7A60A.12e-63(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.13e-28AGAMOUS-like 14
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Bai Z, et al.
    The impact and origin of copy number variations in the Oryza species.
    BMC Genomics, 2016. 17: p. 261
    [PMID:27025496]
  5. Shibaya T, et al.
    Hd18, Encoding Histone Acetylase Related to Arabidopsis FLOWERING LOCUS D, is Involved in the Control of Flowering Time in Rice.
    Plant Cell Physiol., 2016. 57(9): p. 1828-38
    [PMID:27318280]
  6. Han Z,Zhang B,Zhao H,Ayaad M,Xing Y
    Genome-Wide Association Studies Reveal that Diverse Heading Date Genes Respond to Short and Long Day Lengths between Indica and Japonica Rice.
    Front Plant Sci, 2016. 7: p. 1270
    [PMID:27621738]