PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6DS_2BF4B191B.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 61aa MW: 7162.11 Da PI: 5.0192

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6DS_2BF4B191B.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.9	3.2e-08	25	61	1	37
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCsk 37 +fYn+YA e GFsvrks + n+ i+ r+ vCs+ Traes_6DS_2BF4B191B.1 25 EFYNKYALEKGFSVRKSCVEWDGSNKYIILRKIVCSR 61 6**********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.4E-6	25	61	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 61 aa Download sequence Send to blast
ASDESMFEYL NVVSKMFDSE AEGYEFYNKY ALEKGFSVRK SCVEWDGSNK YIILRKIVCS 60 R

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	1e-90	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020152752.1	1e-33	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020188780.1	9e-34	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A452XE59	9e-35	A0A452XE59_AEGTS; Uncharacterized protein
TrEMBL	A0A452XR33	8e-35	A0A452XR33_AEGTS; Uncharacterized protein
TrEMBL	A0A453DSV9	9e-35	A0A453DSV9_AEGTS; Uncharacterized protein
TrEMBL	A0A453IRY7	1e-34	A0A453IRY7_AEGTS; Uncharacterized protein
TrEMBL	A0A453M6J2	1e-34	A0A453M6J2_AEGTS; Uncharacterized protein
STRING	Traes_6DS_2BF4B191B.1	5e-37	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2449	9	76

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]