PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DS_43372C0A6.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 218aa    MW: 24788 Da    PI: 9.076
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DS_43372C0A6.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.51.2e-1199140351
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                             +GV++  k+ +W A I++      +k+++lg+ gt +eAa+++++a+ 
  Traes_6DS_43372C0A6.2  99 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQDEAARLYDRAAF 140
                            79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.96674153IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-898143IPR016177DNA-binding domain
SMARTSM003801.3E-498155IPR001471AP2/ERF domain
PfamPF008476.8E-698141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-6101145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVSLRRRRLL GLCSGKDSLP VDLPKPVENE KHGEVEHANV NPLSVHPLPL TRTSDVLPES  60
SNGSDSLKEE KNQYYPGKEI KRRKRHRRKQ YVDQEPCIMR GVYFKNMKWQ AAIKVDKKQI  120
HLGTVGTQDE AARLYDRAAF MCGREPNFEL SEEEKNELVK YTWDDFLAIT RNTITSKKQR  180
KVGSLRHNKA DLFIGDTEMV NGGGSSNSDD GDVDTSVS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2501020.0AK250102.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf64c22, mRNA sequence.
GenBankAK3645620.0AK364562.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2026I07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197934.11e-163ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A3B6PL751e-162A0A3B6PL75_WHEAT; Uncharacterized protein
TrEMBLA0A3B6QGW81e-162A0A3B6QGW8_WHEAT; Uncharacterized protein
TrEMBLA0A453NUG41e-162A0A453NUG4_AEGTS; Uncharacterized protein
STRINGTraes_6DS_43372C0A6.21e-163(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75163545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.22e-45ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]