PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DS_475E04221.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 264aa    MW: 27458 Da    PI: 9.1904
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DS_475E04221.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.59.5e-086085227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                           kt+lC+ +     Ck Gd+C+FaHg+
  Traes_6DS_475E04221.1 60 KTKLCNKYNTAEGCKWGDKCHFAHGE 85
                           8***********************96 PP
2zf-CCCH35.91.3e-11230255127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            +kt+lC++f + G C +GdrC+FaHg+
  Traes_6DS_475E04221.1 230 FKTKLCDNFTK-GSCTFGDRCHFAHGE 255
                            69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.822120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-145588IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-85789IPR000571Zinc finger, CCCH-type
SMARTSM003560.0635885IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2165886IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-56085IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.1370.109.1E-15127197IPR004088K Homology domain, type 1
SMARTSM003221.0E-8128198IPR004087K Homology domain
PROSITE profilePS5008414.571129193IPR004088K Homology domain, type 1
SuperFamilySSF547915.52E-14131230IPR004088K Homology domain, type 1
CDDcd001054.99E-13131193No hitNo description
PfamPF000138.2E-11131195IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.0E-16227260IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-8229255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.821229256IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-9229259IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-9230255IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MFITSGCPFG EGCHFLHYFP GGHQAVAKMS NLGGQAFAHP QGRMPTGSAV PDGHPTPTVK  60
TKLCNKYNTA EGCKWGDKCH FAHGERELGK QTFINNSMPP HMGPRPTGHF GPPAMPSPGM  120
ATPAGFGASS TAKVSVDASL AGAIIGRGGV NTKQISRVTG AKLAIRDHES NEALKNIELE  180
GTFDQINNAS AMLRELIFRI SGGANAPPPG VILAGGSQRG GGGGGQGSNF KTKLCDNFTK  240
GSCTFGDRCH FAHGENELRK SAAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164455.10.0zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-137C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A3B6QF780.0A0A3B6QF78_WHEAT; Uncharacterized protein
STRINGTraes_6DS_475E04221.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.14e-58C3H family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]