PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DS_7B1596298.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 473aa    MW: 51243.2 Da    PI: 9.393
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DS_7B1596298.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.71.2e-41185261278
                            -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                    SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                            CqvegC++dls++k+yhr+h+vCe hskap+v+v+gle+rfCqqCsrfh+l efD++krsCrrrL++hn+rrrk+q+
  Traes_6DS_7B1596298.1 185 CQVEGCKVDLSSVKDYHRKHRVCELHSKAPKVVVAGLERRFCQQCSRFHALAEFDQKKRSCRRRLNDHNSRRRKPQP 261
                            **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.2E-33177246IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.616182259IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-39184264IPR004333Transcription factor, SBP-box
PfamPF031109.9E-32185258IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MGSFGMEWNQ RSSVLWDWEN FPPIGENPKN AMQADPRFAA VAATMGNEPL HSSGGSGTFS  60
SSSEMGYGSS KSSMSASIDS SNRAGNNMEF RFAPVKNPDR NTSKNTELGK VDNTRTGTSP  120
SPVVAVSSGE PVIGLKLGKR TYFEDVCGGQ NVKSSPSGAA SAPNKSPALG KKAKAEQQKP  180
HNSYCQVEGC KVDLSSVKDY HRKHRVCELH SKAPKVVVAG LERRFCQQCS RFHALAEFDQ  240
KKRSCRRRLN DHNSRRRKPQ PEAISFSSSR MSTMFYDARQ QPNFLFGQAP YVQMRSCGSS  300
SWDDPGGFKV THTKAPWLKP TTAAGVHGIH LSSQQMSDNI MPHGAHHGFD GFMAFKGTCT  360
KFPNQGVQAS AVASDSSGAP DLQHALSLLS SNPVGAANLQ PSPQMHSGVA AIAGAPNPAM  420
HALGSSTGLW LDGSQPLDDH PRFQVFERLG DHDSELQLPK PSYDHASHFD RMH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-271852581184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240257KKRSCRRRLNDHNSRRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4478850.0KF447885.1 Triticum aestivum squamosa promoter-binding-like protein 3 (SPL3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187264.10.0squamosa promoter-binding-like protein 3
RefseqXP_020187265.10.0squamosa promoter-binding-like protein 3
RefseqXP_020187266.10.0squamosa promoter-binding-like protein 3
SwissprotA2X0Q60.0SPL3_ORYSI; Squamosa promoter-binding-like protein 3
SwissprotA3A2Z80.0SPL3_ORYSJ; Squamosa promoter-binding-like protein 3
TrEMBLA0A453N9F70.0A0A453N9F7_AEGTS; Uncharacterized protein
STRINGTraes_6DS_7B1596298.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.35e-45squamosa promoter binding protein-like 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]