PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DS_C2282AFF4.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 153aa    MW: 16951 Da    PI: 11.6066
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DS_C2282AFF4.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.3e-08109134227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            kt+lC+ +     Ck Gd+C+FaHg+
  Traes_6DS_C2282AFF4.2 109 KTKLCNKYNTAEGCKWGDKCHFAHGE 134
                            8***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.9164269IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-14104137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-9106138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.216107135IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-5109134IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
PPSAPARRHH SQATNPSQAR RSYRARARSD GRRRPQEGHG RWRRRRRQAH ASTSGCPFGE  60
GCHFLHYFPG GHQAVAKMSN LGGQAFAHPQ GRMPTGSAVP DGHPTPTVKT KLCNKYNTAE  120
GCKWGDKCHF AHGERELGKQ TFINNSMPPH MGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13146RRRPQEGHGRWRRRRR
23947GRWRRRRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164455.17e-72zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R04e-57C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A287TVT24e-78A0A287TVT2_HORVV; Uncharacterized protein
STRINGTraes_6DS_C2282AFF4.21e-109(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.19e-12C3H family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]