PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DS_C7C1FFE0C.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 280aa    MW: 30415.2 Da    PI: 10.1455
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DS_C7C1FFE0C.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.72.3e-32157210255
                G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Traes_6DS_C7C1FFE0C.1 157 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 210
                            9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.06E-15154211IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-29155211IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-23157211IPR006447Myb domain, plants
PfamPF002491.6E-7158209IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MELFPRQPDL ALQISNTSSS STPPTAPPGS WGRPPDATGA TNMDHFSHHL GFLRAGATDM  60
ANKDGTPPSA WTPPPSAATA ASYSNHISNH YHHRMNALLK PIRGVPIYHH HPSFQQLQHQ  120
HMAMAYRSSG GGGGGGXXGF LSSRSRFPPG RRSVRAPRMR WTTTLHARFV HAVELLGGHE  180
RATPKSVLEL MDVKDLTLAH VKSHLQMYRT IKSTDKPMTS PGQNEGFDNG SAGEISDESL  240
PEALNTHRGT DQNGTSANSH SSSSYNGGLW SNSSRYINFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-16158212357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-16158212357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-16158212357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-16158212357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157571.10.0probable transcription factor KAN2 isoform X2
TrEMBLA0A453MPD61e-179A0A453MPD6_AEGTS; Uncharacterized protein
STRINGTraes_6DS_C7C1FFE0C.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47213665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.17e-41G2-like family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]