PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DS_DF339D22F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 138aa    MW: 14273.5 Da    PI: 10.811
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DS_DF339D22F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.7e-083257227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                           kt+lC+ +     Ck Gd+C+FaHg+
  Traes_6DS_DF339D22F.1 32 KTKLCNKYNTAEGCKWGDKCHFAHGE 57
                           8***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.5E-142960IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-92961IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2163058IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-53257IPR000571Zinc finger, CCCH-type
SuperFamilySSF548144.12E-794137IPR009019K homology domain, prokaryotic type
PROSITE profilePS5008412.118101138IPR004088K Homology domain, type 1
PfamPF000137.6E-6103136IPR004088K Homology domain, type 1
CDDcd001054.74E-7103138No hitNo description
Gene3DG3DSA:3.30.1370.104.9E-7103137IPR004088K Homology domain, type 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MSNLGGQAFA HPQGRMPAGS AVPDGPLTPT VKTKLCNKYN TAEGCKWGDK CHFAHGEREL  60
GKHMFINKSM PPHMGPRPTG HFGPPAMPSP AMTIPAGFGA SSTAKVSVDA SLAGGIIGRG  120
GVNTKQISRV TGAKLAIR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ3907731e-83HQ390773.1 Triticum aestivum clone UCDTA01224 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164559.11e-96zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R05e-70C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A3B6QFY34e-94A0A3B6QFY3_WHEAT; Uncharacterized protein
STRINGTraes_6DS_DF339D22F.14e-97(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-17C3H family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]