PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AL_07431A665.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 182aa    MW: 20668.8 Da    PI: 5.4063
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AL_07431A665.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.54.8e-081191522154
                            HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                            k +yp++e++++L +++gL+ +q+ +WF N+R +
  Traes_7AL_07431A665.2 119 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 152
                            569*****************************87 PP
2ELK30.49e-117394122
                    ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                           ELKh+L+++Y+++L+++++E++
  Traes_7AL_07431A665.2 73 ELKHELKQGYREKLVDIREEIL 94
                           9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037891.4E-67394IPR005539ELK domain
SMARTSM011880.00147394IPR005539ELK domain
PROSITE profilePS5121310.1967393IPR005539ELK domain
PROSITE profilePS5007111.59693156IPR001356Homeobox domain
SuperFamilySSF466893.51E-1695160IPR009057Homeodomain-like
SMARTSM003894.9E-1095160IPR001356Homeobox domain
CDDcd000861.87E-1196157No hitNo description
Gene3DG3DSA:1.10.10.609.9E-25100157IPR009057Homeodomain-like
PfamPF059201.5E-18113152IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEAVMACWEL EQTLQSLTGA SPGEGTGATM SDDEDNPVDS ESNMFDGNDV SDGMGFGMLT  60
EGERSLVERV RQELKHELKQ GYREKLVDIR EEILRKRRAG KLPGDTASTL KAWWQAHAKW  120
PYPTEEDKAR LVQETGLQLK QINNWFINQR KRNWHSNPTS SSSDKSKRKR NNAGDGNAEQ  180
SW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149169RKRNWHSNPTSSSSDKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3539450.0AK353945.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1003P14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196996.11e-132homeobox protein knotted-1-like 11 isoform X1
SwissprotQ0E3C31e-115KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLA0A287XVJ51e-132A0A287XVJ5_HORVV; Uncharacterized protein
TrEMBLA0A287XVR61e-132A0A287XVR6_HORVV; Uncharacterized protein
TrEMBLA0A287XVV91e-132A0A287XVV9_HORVV; Uncharacterized protein
TrEMBLA0A3B6RRP61e-131A0A3B6RRP6_WHEAT; Uncharacterized protein
TrEMBLA0A446XX961e-131A0A446XX96_TRITD; Uncharacterized protein
TrEMBLF2CQP31e-132F2CQP3_HORVV; Predicted protein (Fragment)
STRINGTraes_7AL_07431A665.21e-133(Triticum aestivum)
STRINGTraes_7DL_77A6A7FBF.21e-132(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.12e-95KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]