PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AL_17EF1FF01.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARR-B
Protein Properties Length: 567aa    MW: 62856.9 Da    PI: 8.3008
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AL_17EF1FF01.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.41.8e-24198250255
                G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            +r++Wt++LH++F+ea++q+ G +k  P +ilelm+v++Lt+++++SHLQkYRl
  Traes_7AL_17EF1FF01.2 198 TRVKWTTDLHNKFLEAINQI-GLDKVAPNKILELMNVDCLTRHNIASHLQKYRL 250
                            79******************.9*******************************8 PP
2Response_reg70.66.7e-24261341109
                            EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
           Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                            vl vdD+++ +++l+++l++ +y + + + d++ al++l++++  +Dl+l D++mp+mdG++ll+ i  e  +lp+i+++   +++ +
  Traes_7AL_17EF1FF01.2  26 VLAVDDDRVCLKVLEVLLRHCKY-QPTMVMDAKTALKMLRARKeqFDLVLADVRMPDMDGFKLLELIGLEM-DLPVIMLSVDCDKKAV 111
                            799****************9999.888999999****99665555**********************6644.8*************** PP

                            HHHHHTTESEEEESS--HHHHHH CS
           Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                             + ++ Ga d+l+Kp++ +el +
  Traes_7AL_17EF1FF01.2 112 MKGINHGACDYLMKPVHTNELKN 134
                            *******************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521725.83E-3222146IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.8E-3823178No hitNo description
SMARTSM004482.8E-2524136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.82825140IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.1E-2126134IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.75E-2327139No hitNo description
SuperFamilySSF466892.6E-18194254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-25194255IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-23197250IPR006447Myb domain, plants
PfamPF002493.1E-6199249IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MAAMGGNQRQ MMEDAAEDKF PEGLRVLAVD DDRVCLKVLE VLLRHCKYQP TMVMDAKTAL  60
KMLRARKEQF DLVLADVRMP DMDGFKLLEL IGLEMDLPVI MLSVDCDKKA VMKGINHGAC  120
DYLMKPVHTN ELKNIWQHVE SRRRSQAISH MGRDNDDDQR VHPGTLAKNK DSKSKSNEKD  180
SSNENKESTR ASTTHKNTRV KWTTDLHNKF LEAINQIGLD KVAPNKILEL MNVDCLTRHN  240
IASHLQKYRL YLNRVKPNSL GDASERQNSS MDNQRNFMHN HEHERWHVSS CGIPSWSPNY  300
FGATSQLGQL TDSQSSLCMG SLIHGGRMSR YLVPHTPDVR RFAGSEDPPI SLDNGILDDI  360
MLDEFSTYSS GTSYVDSMRG KLMETSKGKS PSNLRSYFTN TPSGRGSSAP TNEYQVNLTG  420
ILHRGGTSHV PPHVNIPRIN QLTNYETSSS GLLLQNQLPP FIGNTTSVTG FNEQIVPFNI  480
PTNPSSVGML NAHNSTPMAP SQMFSGGRIT TLREGFNEKI SPFNIASNAS SVGTMLNGNS  540
ALGIGSTSKT ETNMVNSGRT ISTGSNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-18193255163ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198970.10.0two-component response regulator ORR24-like
TrEMBLA0A3B6RNH00.0A0A3B6RNH0_WHEAT; Uncharacterized protein
STRINGTraes_7AL_17EF1FF01.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15285415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.13e-81response regulator 12
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]