PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AL_3C02C0206.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 56aa    MW: 6392.5 Da    PI: 12.1835
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AL_3C02C0206.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.97.8e-081038432
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC.. CS
                    HLH  4 ahnerErrRRdriNsafeeLrellPkask 32
                            h+  E+r R+riN+++  L++l+P++ k
  Traes_7AL_3C02C0206.1 10 LHKLSEKRQRSRINEKMKVLQSLIPNSNK 38
                           5999**********************643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-8343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.896656IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-8944IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-51039IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 56 aa     Download sequence    Send to blast
GSKRTRAAEL HKLSEKRQRS RINEKMKVLQ SLIPNSNKVG TTKPTRHPCL TRPLSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11520KRQRSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3747873e-42AK374787.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3076F24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561052.26e-14transcription factor SPATULA
RefseqXP_014752502.16e-14transcription factor SPATULA
RefseqXP_020110210.15e-14uncharacterized protein LOC109725427 isoform X2
STRINGTraes_7AL_3C02C0206.12e-32(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-14phytochrome interacting factor 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]