PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AL_84F34A1C2.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SRS
Protein Properties Length: 136aa    MW: 14099.8 Da    PI: 4.7913
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AL_84F34A1C2.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70274.82.5e-2356394152
                 DUF702  94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152
                            ++s+      ++P+e+s eavfrcvr++ vd+ ++e+aYqtavsigGh+fkGiL+d+G 
  Traes_7AL_84F34A1C2.1   5 TTSSAGEGDGRFPPELSLEAVFRCVRIGPVDEPDAEFAYQTAVSIGGHTFKGILRDHGX 63 
                            44555566677**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.2E-20963IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016244.9E-191562IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MVDATTSSAG EGDGRFPPEL SLEAVFRCVR IGPVDEPDAE FAYQTAVSIG GHTFKGILRD  60
HGXXXXXXXX XXXSSAEYHQ LTGAAREGSS PAGSSEAAGG HGATVATSAA VLMDPYPTPI  120
GAFAAGTQFF PHNPRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6783471e-89AB678347.1 Hordeum vulgare subsp. vulgare Lks2 gene for putative short internodesfamily transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192925.11e-78protein SHI RELATED SEQUENCE 1-like
RefseqXP_020192926.11e-78protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A287XEN83e-82A0A287XEN8_HORVV; Putative short internodesfamily transcription factor
STRINGTraes_7AL_84F34A1C2.14e-83(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.14e-22Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]