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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Traes_7AL_B58112C48.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | LSD | ||||||||
| Protein Properties | Length: 132aa MW: 14147.1 Da PI: 9.2722 | ||||||||
| Description | LSD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-LSD1 | 21.5 | 4e-07 | 22 | 46 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+gC l Y rGA +VRC+ C+ V
Traes_7AL_B58112C48.1 22 CNGCFSLVLYNRGAANVRCSGCNRV 46
**********************966 PP
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| 2 | zf-LSD1 | 39.5 | 9.3e-13 | 60 | 84 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg Crt+L+YP+GA+ V Ca+C++V
Traes_7AL_B58112C48.1 60 CGRCRTTLMYPPGASTVGCANCQHV 84
************************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| TIGRFAMs | TIGR01053 | 1.6E-7 | 20 | 47 | IPR005735 | Zinc finger, LSD1-type |
| Pfam | PF06943 | 2.9E-7 | 22 | 44 | IPR005735 | Zinc finger, LSD1-type |
| TIGRFAMs | TIGR01053 | 2.7E-11 | 57 | 86 | IPR005735 | Zinc finger, LSD1-type |
| Pfam | PF06943 | 1.1E-11 | 60 | 84 | IPR005735 | Zinc finger, LSD1-type |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 132 aa Download sequence Send to blast |
MPRCTSSVNY QTETATMSEL ICNGCFSLVL YNRGAANVRC SGCNRVNSTR SASQIAHLTC 60 GRCRTTLMYP PGASTVGCAN CQHVNPVRTQ GSSAPPDAHA RPQTVLVENP RTMNDKGKLV 120 SNVAVGVTSW KR |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AK249896 | 1e-171 | AK249896.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf55k22, mRNA sequence. | |||
| GenBank | AK353682 | 1e-171 | AK353682.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1002A12. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020167616.1 | 1e-84 | protein LOL4-like | ||||
| Swissprot | Q84UR0 | 5e-54 | LOL4_ORYSJ; Protein LOL4 | ||||
| TrEMBL | A0A3B6RGA2 | 4e-92 | A0A3B6RGA2_WHEAT; Uncharacterized protein | ||||
| TrEMBL | A0A446XIK9 | 4e-92 | A0A446XIK9_TRITD; Uncharacterized protein | ||||
| STRING | Traes_7AL_B58112C48.1 | 6e-93 | (Triticum aestivum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP12333 | 29 | 38 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G20380.7 | 2e-27 | LSD family protein | ||||
| Publications ? help Back to Top | |||
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