PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AL_EA6F4FFDE.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 256aa    MW: 27519.7 Da    PI: 10.2222
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AL_EA6F4FFDE.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.56.8e-17143179135
                   GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C++Cgt    Tp++Rrgp+g++tLCnaCGl+++ kg+
  Traes_7AL_EA6F4FFDE.2 143 CHHCGTNAhnTPMMRRGPEGPRTLCNACGLMWANKGM 179
                            ******9999***********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.79742IPR010399Tify domain
SMARTSM009793.2E-11742IPR010399Tify domain
PfamPF062009.9E-131141IPR010399Tify domain
PROSITE profilePS5101713.33468110IPR010402CCT domain
PfamPF062037.1E-1668110IPR010402CCT domain
PROSITE profilePS501149.249137194IPR000679Zinc finger, GATA-type
SMARTSM004015.1E-13137190IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.57E-12141192No hitNo description
CDDcd002025.28E-15142189No hitNo description
Gene3DG3DSA:3.30.50.107.3E-16142184IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.2E-14143178IPR000679Zinc finger, GATA-type
PROSITE patternPS003440143170IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MVSAIVPPTT GNQLTLSFQG EVYVFDSVSP DKVQAVLLLL GGRELNPGMG AGASSSTPYS  60
KRLNFPHRVA SLMRFREKRK ERNFDKKIRY TVRKEVALRM QRNRGQFTSS KPKPDDGTSE  120
LATADGSPNW GSVEGRPPSA ASCHHCGTNA HNTPMMRRGP EGPRTLCNAC GLMWANKGML  180
RDLSKSTPPS LQMVSTGPND SQNGNTLSQQ NGNTLSQQNG STLSQQNGNA AIVPFAEQQN  240
PAPATDANGH DHGSST
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3631600.0AK363160.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2013C24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192767.11e-178GATA transcription factor 20-like isoform X3
SwissprotQ5Z4U51e-124GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A3B6RL050.0A0A3B6RL05_WHEAT; Uncharacterized protein
STRINGTraes_7AL_EA6F4FFDE.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.22e-76ZIM-LIKE 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]