PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AS_1318B59D3.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARR-B
Protein Properties Length: 660aa    MW: 72435.9 Da    PI: 6.2313
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AS_1318B59D3.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.32.6e-26218272155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ.kYRl 55 
                            +pr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQ kYRl
  Traes_7AS_1318B59D3.2 218 RPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVEKLTRENVASHLQqKYRL 272
                            59*******************.****************************649**8 PP
2Response_reg78.32.6e-26301381109
                            EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
           Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                            vl vdD+p+ +++l+++l++ +y +v+++ ++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge + +
  Traes_7AS_1318B59D3.2  30 VLAVDDDPVCLKVLEVLLRRCQY-HVTTTNQAATALRLLRENKdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKSV 115
                            799********************.***************99999********************87754.558*************** PP

                            HHHHHTTESEEEESS--HHHHHH CS
           Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                            l+ +  Ga d+l Kp+ +eel++
  Traes_7AS_1318B59D3.2 116 LKGITHGACDYLLKPVRIEELRN 138
                            *********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.4E-1745660IPR017053Response regulator B-type, plant
SuperFamilySSF521726.55E-3527154IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.2E-4127170No hitNo description
SMARTSM004485.6E-3128140IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.85829144IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.8E-2330138IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.79E-2631143No hitNo description
PROSITE profilePS5129410.01215274IPR017930Myb domain
SuperFamilySSF466891.52E-16216276IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-28216277IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-23219272IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MLLDAMMMEA RKGMMERERE RDQFPVGMRV LAVDDDPVCL KVLEVLLRRC QYHVTTTNQA  60
ATALRLLREN KDMFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSVNG ETKSVLKGIT  120
HGACDYLLKP VRIEELRNVW QHVVRRKFSN REPNSNLDLC KEISKPPSAD SYHRLGQATC  180
DSHRSCDQSN RAGKKRKEPH SEEEDEGEDN DDAAGSKRPR VVWSVELHRK FVAAVNQLGI  240
DKAVPKRILE LMNVEKLTRE NVASHLQQKY RLYLRRLSAV ASQQASIAAA FGGRDPFLHM  300
GAFEGLHSYH QPFAPSAALP SFNPHGLLSS AGAAAFGLQD LASPKANQCS SSNDAVSHCA  360
GDTDKFHIVS LQDNQQADLS QGLTSSSLGQ PQLQQKWIHQ ETNDLCSVFS GGALANTLSG  420
TLQRVTSSSL PPEDLLECTT HIKVGAHPSI GIPTASSGLL ERSVGVSADF RDSCISQRCA  480
LLISDGFSVD KLPLHIPFDR VGATKLDASF VAGEHEMDQK GIFSERMGVS VCPSESLIVA  540
SNAKCRASSS GSTILPLPHD TERHSKYLQF GAASNSRHRM DGMRQDHRLN NDGFSYDGGA  600
IVPEQTDMYD LGVPKLQGGF NSSSCNFDGL LNSIIKVEND EVPFNENDLG CELFPLGACI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-21215278264ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3699660.0AK369966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2102E11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190045.10.0two-component response regulator ORR22-like
SwissprotQ5SML50.0ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLA0A3B6REK70.0A0A3B6REK7_WHEAT; Two-component response regulator
STRINGTraes_7AS_1318B59D3.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.17e-97response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]