PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AS_375BA0ECA.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 88aa    MW: 9902.16 Da    PI: 9.3634
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AS_375BA0ECA.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.6e-0914551554
                           HHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHH CS
                    HLH 15 riNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksL 54
                           +iN+ +++L++llP+ +  + +s   s   +L++++ YIksL
  Traes_7AS_375BA0ECA.1 14 EINELISRLQTLLPTtRRrGSSSSQASTTKMLKETCSYIKSL 55
                           7**************6665555556****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.305155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-4961IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-101275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-61455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-91459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MSGRRSRGSV SEEEINELIS RLQTLLPTTR RRGSSSSQAS TTKMLKETCS YIKSLHREVD  60
DLSDRLSDLM STMDNNSPAA EIIRSLLR
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea (By similarity). {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. {ECO:0000269|PubMed:23136524}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168701.14e-55transcription factor ILI5-like
SwissprotA2X9L83e-40ILI5_ORYSI; Transcription factor ILI5
SwissprotQ6YUX03e-40ILI5_ORYSJ; Transcription factor ILI5
TrEMBLA0A3B6RBP32e-54A0A3B6RBP3_WHEAT; Uncharacterized protein
STRINGTraes_7AS_375BA0ECA.14e-55(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.12e-09bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]