PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AS_3B8CB5283.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 64aa    MW: 7025.14 Da    PI: 9.4917
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AS_3B8CB5283.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.3e-182164144
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                           +g+WT+eEd+llvd++++ G g+W++ ++  g++R++k+c++rw
  Traes_7AS_3B8CB5283.1 21 KGPWTPEEDKLLVDYIQEKGHGSWRRLPKLAGLNRCGKSCRLRW 64
                           79****************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.261664IPR017930Myb domain
SuperFamilySSF466892.01E-141864IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-191964IPR009057Homeodomain-like
SMARTSM007174.6E-62064IPR001005SANT/Myb domain
PfamPF002493.1E-162164IPR001005SANT/Myb domain
CDDcd001671.37E-102364No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
LVGGGAMGRS PCCDGEAGVK KGPWTPEEDK LLVDYIQEKG HGSWRRLPKL AGLNRCGKSC  60
RLRW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0572607e-62EF057260.1 Panicum virgatum microsatellite PVSSR146 and microsatellite PVSSR147 sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179049.13e-35transcription factor MYB39-like
SwissprotQ9S9Z22e-31MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A453QDI42e-34A0A453QDI4_AEGTS; Uncharacterized protein
TrEMBLA0A453QDI62e-34A0A453QDI6_AEGTS; Uncharacterized protein
STRINGTraes_7AS_3B8CB5283.13e-39(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.17e-34myb domain protein 93
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]