PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AS_503B57D77.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARR-B
Protein Properties Length: 258aa    MW: 29667.3 Da    PI: 7.253
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AS_503B57D77.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.25.9e-26205255152
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                            kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQk
  Traes_7AS_503B57D77.1 205 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVEKLTRENVASHLQK 255
                            79*******************.*****************************9 PP
2Response_reg81.82.3e-27261341109
                            EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
           Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                            vl vdD+p+ +++l+++l++ +y +v+++ ++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge +++
  Traes_7AS_503B57D77.1  26 VLAVDDDPVCLKVLEVLLRRCQY-HVTTTNQAATALRLLRENKdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKTV 111
                            799********************.***************99999********************87754.558*************** PP

                            HHHHHTTESEEEESS--HHHHHH CS
           Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                            l+ +  Ga d+l Kp+ +eel++
  Traes_7AS_503B57D77.1 112 LKGITHGACDYLLKPVRIEELRN 134
                            *********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.9E-1465256IPR017053Response regulator B-type, plant
SuperFamilySSF521723.13E-3623149IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.9E-4223178No hitNo description
SMARTSM004481.5E-3124136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.2325140IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.3E-2426134IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.76E-2627139No hitNo description
Gene3DG3DSA:1.10.10.602.0E-26202255IPR009057Homeodomain-like
PROSITE profilePS5129410.436202258IPR017930Myb domain
SuperFamilySSF466897.88E-17203255IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-23205255IPR006447Myb domain, plants
PfamPF002493.7E-6207255IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MLLDAMMMEA RKGLMERDQF PAGMRVLAVD DDPVCLKVLE VLLRRCQYHV TTTNQAATAL  60
RLLRENKDMF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI MLSVNGETKT VLKGITHGAC  120
DYLLKPVRIE ELRNVWQHVV RRKFCNREPN NLDFCKDSYH RLGQAICDSH RSSDQSNRAR  180
RKRKELHSEE EDEGEDNDDA AASKKPRVVW SVELHRKFVA AVNQLGIDKA VPKRILELMN  240
VEKLTRENVA SHLQKQPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-21201255155ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179184RRKRKE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3699660.0AK369966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2102E11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175011.11e-160two-component response regulator ORR22-like isoform X3
RefseqXP_020175012.11e-160two-component response regulator ORR22-like isoform X4
RefseqXP_020190045.11e-159two-component response regulator ORR22-like
SwissprotB8B3I41e-143ORR22_ORYSI; Two-component response regulator ORR22
SwissprotQ5SML51e-143ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLA0A3B6RAC71e-168A0A3B6RAC7_WHEAT; Two-component response regulator
STRINGTraes_7AS_503B57D77.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-104response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]