PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AS_6A126F5F5.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 114aa    MW: 13299.2 Da    PI: 10.2722
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AS_6A126F5F5.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding414.5e-1357103147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            r+ WT+eE++ ++ + + +G g+Wk I++++ +++t+ q+ s+ qk+
  Traes_7AS_6A126F5F5.1  57 RKYWTKEEHKSFLYGLEVYGRGDWKNISKHFITTKTPVQVSSHAQKF 103
                            678******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.25E-1755109IPR009057Homeodomain-like
PROSITE profilePS5129312.16755108IPR017884SANT domain
Gene3DG3DSA:1.10.10.606.3E-1156111IPR009057Homeodomain-like
SMARTSM007171.7E-1056106IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.1E-1456106IPR006447Myb domain, plants
PfamPF002497.6E-1057102IPR001005SANT/Myb domain
CDDcd001679.79E-960104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MIDNGFSFRC ALEDTTQLED TRIRKMEEAP MMVDKNKMVV LENKTSTDRP VVAAHQRKYW  60
TKEEHKSFLY GLEVYGRGDW KNISKHFITT KTPVQVSSHA QKFFKRIQKK GSSG
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167095.12e-73uncharacterized protein LOC109752608
SwissprotQ8S9H73e-17DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A3B6TAG64e-72A0A3B6TAG6_WHEAT; Uncharacterized protein
TrEMBLA0A453QWE65e-72A0A453QWE6_AEGTS; Uncharacterized protein
STRINGTraes_7AS_6A126F5F5.19e-82(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-20MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]