PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AS_715C6A2D6.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 234aa    MW: 26931.6 Da    PI: 8.5838
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AS_715C6A2D6.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.34.3e-1730102174
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdg 74 
                            +fYn+YAk  GFsvrk++ k++   g  ++r ++Cskeg+r+ ++ + ++++r++ra +r+gC+a+l+++++ ++
  Traes_7AS_715C6A2D6.2  30 EFYNRYAKAKGFSVRKANVKNK--GGIRIQRLYMCSKEGYRSLKNFErSNRKRKPRALSRCGCDAQLQIELNMEN 102
                            6****************98877..8999*************9988775789999****************98644 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1530102IPR004330FAR1 DNA binding domain
PfamPF105511.3E-23103182IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDAHHVSIEE TEEYYTVVSQ TFTSEEQGFE FYNRYAKAKG FSVRKANVKN KGGIRIQRLY  60
MCSKEGYRSL KNFERSNRKR KPRALSRCGC DAQLQIELNM ENRVNKYNLP FVPFIGLNHH  120
RSTVVFGVGI VSDETVASYK WLLHSFLEAM HQNHPRSVIT DGDHAMARAI LQVWPNTDHR  180
LATSKGEERD IRLRWVMILV DGQQLECTHM GEHLFSSTLE ATPGACRTCL PPEP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703063e-76HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169082.11e-61protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020169083.11e-61protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020169084.11e-61protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020169085.11e-61protein FAR1-RELATED SEQUENCE 5-like
TrEMBLQ7X8F33e-44Q7X8F3_ORYSJ; OSJNBa0041M21.10 protein
STRINGTraes_7AS_715C6A2D6.21e-178(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.15e-19FAR1-related sequence 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]