PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AS_73BC102D3.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 216aa    MW: 24192.3 Da    PI: 8.2784
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AS_73BC102D3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.61.3e-12167215348
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                            rW+  E+e l ++v+q+G+ +Wk I  + +    gRt  ++k++w++ +
  Traes_7AS_73BC102D3.1 167 RWSSVEEETLRKGVEQFGSSNWKDILIHNPdafIGRTTVDLKDKWRNMM 215
                            9*********************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-13160216IPR009057Homeodomain-like
PROSITE profilePS5129414.946160216IPR017930Myb domain
SuperFamilySSF466895.17E-14162215IPR009057Homeodomain-like
SMARTSM007170.0011164216IPR001005SANT/Myb domain
PfamPF002493.3E-10167214IPR001005SANT/Myb domain
CDDcd116602.22E-17168216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MPIIDGTILE LTGGKEKTRE ILSKIEDRIS TPQVHKVIHD LKLSCADLHN VVDDPLPAAK  60
AAADKVLAAR MDKAVHINDE EFNNQAANCS IAGPSAVNDQ GDTLRKGTPS SLMDWNPTAQ  120
SLLWEDSLDP DGSRSQSHRP HLPSPRRIPV SPLQVAENKA RRRRARRWSS VEEETLRKGV  180
EQFGSSNWKD ILIHNPDAFI GRTTVDLKDK WRNMMR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3755070.0AK375507.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3096E16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185046.11e-132uncharacterized protein LOC109770747
TrEMBLM7ZKI11e-156M7ZKI1_TRIUA; Telomeric repeat-binding factor 1
STRINGTraes_7AS_73BC102D3.11e-158(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.14e-15TRF-like 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]