PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AS_8123257BA.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 26149.7 Da    PI: 9.5373
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AS_8123257BA.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.56.2e-27959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           +ri+n++nrqvtfskRr g++KKA EL +LCda+ a+iifsstg+ly+++s
  Traes_7AS_8123257BA.1  9 ERIDNTTNRQVTFSKRRGGLMKKARELAILCDADLALIIFSSTGRLYDFAS 59
                           69***********************************************86 PP
2K-box71.72.2e-2482171998
                  K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                            + +++a+ +q+e++ L+++++nL +++R+llGe+L+  ++++Lq L +q+e sl +iR++K++++ ++i+el +k   +q+en +L k
  Traes_7AS_8123257BA.1  82 NPTSEAKLWQREVTTLRQQVQNLHHNNRQLLGEELSGTTIRDLQFLVNQVEMSLHSIRKTKEQVMAAEIHELNQKGFLVQKENVKLDK 169
                            56788999*******************************************************************************9 PP

                  K-box  97 kl 98 
                            k+
  Traes_7AS_8123257BA.1 170 KF 171
                            97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.413161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-38160IPR002100Transcription factor, MADS-box
CDDcd002653.47E-41277No hitNo description
SuperFamilySSF554551.24E-31292IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-283859IPR002100Transcription factor, MADS-box
PfamPF014863.5E-2384171IPR002487Transcription factor, K-box
PROSITE profilePS5129712.63487177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGRGKIAIER IDNTTNRQVT FSKRRGGLMK KARELAILCD ADLALIIFSS TGRLYDFASS  60
SGMQAILERY QKAKEEHCGV LNPTSEAKLW QREVTTLRQQ VQNLHHNNRQ LLGEELSGTT  120
IRDLQFLVNQ VEMSLHSIRK TKEQVMAAEI HELNQKGFLV QKENVKLDKK FSIAHEQNIE  180
LRKQLSAAMR SSEQQASGSN SKAAAGLLLS TRVREPNIDL ELRQQEHEDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-22177176MEF2C
5f28_B7e-22177176MEF2C
5f28_C7e-22177176MEF2C
5f28_D7e-22177176MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM5029030.0AM502903.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM31C (WM31C gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153469.11e-160MADS-box transcription factor 25-like
SwissprotQ84NC51e-108MAD25_ORYSJ; MADS-box transcription factor 25
TrEMBLA0A3B6RDC31e-167A0A3B6RDC3_WHEAT; Uncharacterized protein
TrEMBLA0A446X2671e-167A0A446X267_TRITD; Uncharacterized protein
STRINGTraes_7AS_8123257BA.11e-168(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.12e-61AGAMOUS-like 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  4. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]