PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7AS_937121AF8.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HSF

Protein Properties

Length: 59aa MW: 7144.26 Da PI: 10.9795

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7AS_937121AF8.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	67.8	2.3e-21	1	53	41	102
HHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 41 LpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102 LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F++g+k+ll++i+r+k Traes_7AS_937121AF8.1 1 LPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEKRLLCDIHRRKV 53 89***********************99.........********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.4E-20	1	46	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.1E-17	1	51	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE pattern	PS00434	0	1	25	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SMART	SM00415	1.4E-13	1	51	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	5.3E-18	1	51	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 59 aa Download sequence Send to blast
LPKYFKHNNF SSFVRQLNTY GFRKIVPDRW EFANDCFRRG EKRLLCDIHR RKVTPTVAA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	6e-15	1	54	59	122	Heat shock factor protein 1
5d5u_B	6e-15	1	54	68	131	Heat shock factor protein 1
5d5v_B	6e-15	1	54	68	131	Heat shock factor protein 1
5d5v_D	6e-15	1	54	68	131	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ771755	4e-94	JQ771755.1 Triticum aestivum HSF3 mRNA, complete cds.
GenBank	KP063542	4e-94	KP063542.1 Triticum aestivum heat-responsive transcription factor (HSF-2) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020197754.1	9e-39	heat stress transcription factor B-2b-like
Swissprot	Q652B0	2e-34	HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBL	F2EA61	6e-38	F2EA61_HORVV; Predicted protein
TrEMBL	M0Z0T0	6e-38	M0Z0T0_HORVV; Uncharacterized protein
STRING	MLOC_75166.4	1e-38	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11660.1	3e-31	HSF family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Rerksiri W,Zhang X,Xiong H,Chen X Expression and promoter analysis of six heat stress-inducible genes in rice. ScientificWorldJournal, 2013. 2013: p. 397401 [PMID:24459431]