PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7AS_A4B5D1816.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Protein Properties

Length: 109aa MW: 12729.2 Da PI: 9.7567

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7AS_A4B5D1816.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.4	2e-16	14	104	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k +t+s+v+ +l lpk+f+++h k ++ +tl de+g + + ++ rk + l++ Wk F+ ++L +gD +vF++++r Traes_7AS_A4B5D1816.1 14 FVKPMTQSHVTGGFWLGLPKQFCTRHLPK--RDEWITLVDEKGAESDSYYLARKWG----LSAQWKAFAINHKLVDGDCLVFERIDRA 95 89**********************433..4558***********444444....9999*****************88777 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +f +v+++r+ Traes_7AS_A4B5D1816.1 96 KF--KVHIIRQ 104 77..9999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.55E-22	10	105	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.3E-20	11	105	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.75E-23	13	103	No hit	No description
Pfam	PF02362	9.1E-15	14	104	IPR003340	B3 DNA binding domain
SMART	SM01019	2.0E-16	14	105	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.841	14	105	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
MAEQLQGKLD XXSFVKPMTQ SHVTGGFWLG LPKQFCTRHL PKRDEWITLV DEKGAESDSY 60 YLARKWGLSA QWKAFAINHK LVDGDCLVFE RIDRAKFKVH IIRQSSYYK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK357200	2e-94	AK357200.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1048A23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020185096.1	4e-68	B3 domain-containing protein Os06g0194400-like isoform X2
Swissprot	Q69V36	3e-42	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A3B6RBY5	6e-73	A0A3B6RBY5_WHEAT; Uncharacterized protein
TrEMBL	A0A446WZD2	6e-73	A0A446WZD2_TRITD; Uncharacterized protein
STRING	Traes_7AS_A4B5D1816.1	3e-75	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	2e-41	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]