PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AS_C25A349A9.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 26286.8 Da    PI: 8.5853
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AS_C25A349A9.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.73.1e-28959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           kri+nk+ rqvtf+kRrng+lKKA+ELS LCdaeva+iifs +g+l+e+s+
  Traes_7AS_C25A349A9.1  9 KRIDNKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSARGRLFEFST 59
                           79***********************************************96 PP
2K-box92.28.8e-318517213100
                  K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                            ++ s +qe+ kLk ++e Lq++qR+llGedL++L++keL+qLe+q+e slk+iR++K++  l+q+ el++kek+lq+ nk+Lrkk++e
  Traes_7AS_C25A349A9.1  85 TELSNYQEYLKLKTRVEFLQTTQRNLLGEDLGPLNMKELEQLENQIEISLKHIRATKSQQSLDQLFELKRKEKQLQDVNKDLRKKIQE 172
                            3456789*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.184161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-31289IPR002100Transcription factor, MADS-box
CDDcd002653.22E-40278No hitNo description
PRINTSPR004041.7E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.3E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.19186176IPR002487Transcription factor, K-box
PfamPF014861.1E-2588171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGRGKVELKR IDNKISRQVT FAKRRNGLLK KAYELSLLCD AEVALIIFSA RGRLFEFSTS  60
SRMYKTLERY RSCNFNSEAT ATPETELSNY QEYLKLKTRV EFLQTTQRNL LGEDLGPLNM  120
KELEQLENQI EISLKHIRAT KSQQSLDQLF ELKRKEKQLQ DVNKDLRKKI QETGADSVLQ  180
MFCQDVGPSG SSGHANQANQ QEYFHPDCDP SLRMGYDHAY LDHLNKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A3e-248517016101Developmental protein SEPALLATA 3
4ox0_B3e-248517016101Developmental protein SEPALLATA 3
4ox0_C3e-248517016101Developmental protein SEPALLATA 3
4ox0_D3e-248517016101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:16217607, ECO:0000269|PubMed:9085264, ECO:0000269|Ref.8}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ5123700.0DQ512370.1 Triticum aestivum MADS-box transcription factor TaAGL40 (AGL40) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184037.11e-152MADS-box transcription factor 5-like
SwissprotA2Y9P01e-124MADS5_ORYSI; MADS-box transcription factor 5
SwissprotQ0DEB81e-124MADS5_ORYSJ; MADS-box transcription factor 5
TrEMBLA0A3B6R9K01e-167A0A3B6R9K0_WHEAT; Uncharacterized protein
TrEMBLA0A446X3421e-167A0A446X342_TRITD; Uncharacterized protein
STRINGTraes_7AS_C25A349A9.11e-168(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22213264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.13e-77MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cui R, et al.
    Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa).
    Plant J., 2010. 61(5): p. 767-81
    [PMID:20003164]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]