PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7AS_D4F03387A.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-other

Protein Properties

Length: 200aa MW: 22961.7 Da PI: 7.5422

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7AS_D4F03387A.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.4	1.8e-21	27	82	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t+ q+++Le++F+++++p++++r+ L+++lgL+ rq+k+WFqNrR+++k Traes_7AS_D4F03387A.1 27 RKRYHRHTPRQIQTLEAMFKECPHPDEAQRANLSRELGLEARQIKFWFQNRRTQMK 82 688899***********************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.3E-22	6	82	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.55E-20	11	84	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.75	24	84	IPR001356	Homeobox domain
SMART	SM00389	7.2E-20	25	88	IPR001356	Homeobox domain
Pfam	PF00046	5.2E-19	27	82	IPR001356	Homeobox domain
CDD	cd00086	1.36E-18	27	85	No hit	No description
PRINTS	PR00031	6.5E-5	55	64	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	59	82	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.5E-5	64	80	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MDFGDDQEGG SESNQHQQQQ QNQNQRRKRY HRHTPRQIQT LEAMFKECPH PDEAQRANLS 60 RELGLEARQI KFWFQNRRTQ MKAQHERQDN CFLRQENDKI RCENIAMREA LKNVICPTCG 120 GPPIAEDYFD EQKLRMENAR LKQELDSVAG LTAKYLGRPF TQLPQGTPQM NVSSLDLSMG 180 GVPMGGGHHQ PFGGGLSLDL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020150479.1	1e-113	homeobox-leucine zipper protein ROC8-like
Swissprot	Q69T58	1e-100	ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBL	A0A3B6RBP5	1e-143	A0A3B6RBP5_WHEAT; Uncharacterized protein
STRING	Traes_7AS_D4F03387A.1	1e-148	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15929	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73360.1	8e-73	homeodomain GLABROUS 11

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]