PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7AS_D9A440FE2.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ERF

Protein Properties

Length: 71aa MW: 8085.22 Da PI: 10.1077

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7AS_D9A440FE2.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	32.9	1.7e-10	1	35	18	55
AP2 18 eIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 eIrdp++ r++lg++ +aeeAa+a++ +++++g Traes_7AS_D9A440FE2.1 1 EIRDPRK---GVRVWLGTYNSAEEAARAYDVEARRIRG 35 7999843...4************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	9.4E-16	1	49	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	15.949	1	43	IPR001471	AP2/ERF domain
CDD	cd00018	2.85E-19	1	44	No hit	No description
Gene3D	G3DSA:3.30.730.10	9.3E-21	1	45	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.31E-13	1	44	IPR016177	DNA-binding domain
Pfam	PF00847	3.7E-5	6	35	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 71 aa Download sequence Send to blast
EIRDPRKGVR VWLGTYNSAE EAARAYDVEA RRIRGKKAKV NFPEEAPMAP QQRCATSVKV 60 PEFNTEQKPV L

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269\|PubMed:12913152}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ689809	1e-115	KJ689809.1 Triticum turgidum subsp. durum ethylene response factor 1 short form L (ERF1) mRNA, complete cds.
GenBank	KJ689812	1e-115	KJ689812.1 Triticum turgidum subsp. durum ethylene response factor 1 (ERF1) gene, complete cds.
GenBank	KJ689813	1e-115	KJ689813.1 Triticum turgidum subsp. durum ethylene response factor 1 short form P (ERF1) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020183034.1	1e-41	ethylene-responsive transcription factor 1-like
Swissprot	Q6K7E6	1e-26	ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBL	A0A446X5I2	1e-42	A0A446X5I2_TRITD; Uncharacterized protein
TrEMBL	A0A446Y5G9	1e-42	A0A446Y5G9_TRITD; Uncharacterized protein
TrEMBL	A0A446Y5I3	1e-42	A0A446Y5I3_TRITD; Uncharacterized protein
STRING	Traes_7AS_D9A440FE2.1	3e-45	(Triticum aestivum)
STRING	TRIUR3_28474-P1	4e-43	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP103	37	465

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72360.1	3e-23	ERF family protein

Publications ? help Back to Top
Kim CY, et al. Identification of rice blast fungal elicitor-responsive genes by differential display analysis. Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4 [PMID:10755311] Koo SC, et al. OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33. Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70 [PMID:19607808] Iwamoto M,Takano M Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice. Biotechnol. Lett., 2011. 33(1): p. 173-8 [PMID:20872166] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Serra TS, et al. OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors. Plant Mol. Biol., 2013. 82(4-5): p. 439-55 [PMID:23703395] Jisha V, et al. Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice. PLoS ONE, 2015. 10(6): p. e0127831 [PMID:26035591] Lourenço TF, et al. The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors. Plant Physiol., 2015. 169(3): p. 2275-87 [PMID:26381316]