PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AS_DE61FE07F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 207aa    MW: 22751.7 Da    PI: 8.2519
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AS_DE61FE07F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.38.7e-12118206178
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkw 76 
                            +fYn Y+ e+GF vr +ks+ + +  +  +++ vC + g++ +e+++             +  r+++ + r+gC+a++++ +++d+ w
  Traes_7AS_DE61FE07F.1 118 EFYNLYSWECGFGVRLAKSRLNVER-KRCMQEIVCACAGEPLRENSRsarcgcnamirlPRALRENSRSARCGCNAMIRLPRSNDKGW 204
                            6*****************9999554.478899*******9988888889********99889999*********************** PP

                   FAR1  77 ev 78 
                            ++
  Traes_7AS_DE61FE07F.1 205 YI 206
                            99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-8118206IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MSTNGVEING ISAASGARST SVLPLESQDS MSVPNDVFAA AGCARPHVDA VVGEVCSETT  60
SGWTRRVRVG KAPEEREMNP NRISALELSV RAYTEKRDGP VVYPSIGTSF DSLDEAYEFY  120
NLYSWECGFG VRLAKSRLNV ERKRCMQEIV CACAGEPLRE NSRSARCGCN AMIRLPRALR  180
ENSRSARCGC NAMIRLPRSN DKGWYIA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155776.11e-107protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A446X4Y41e-125A0A446X4Y4_TRITD; Uncharacterized protein
STRINGTraes_7AS_DE61FE07F.11e-150(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.12e-10FAR1-related sequence 8
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]