PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AS_DECB8080D.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARR-B
Protein Properties Length: 618aa    MW: 68018.2 Da    PI: 6.9956
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AS_DECB8080D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.21.8e-28202255155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  Traes_7AS_DECB8080D.1 202 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 255
                            79*******************.********************************8 PP
2Response_reg78.52.3e-26231311109
                            EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
           Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                            vl vdD+p+ +++l+++l++ +y +v+++ ++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge + +
  Traes_7AS_DECB8080D.1  23 VLAVDDDPVCLKVLEVLLRRCQY-HVTTTNQAATALRLLRENKdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKSV 108
                            799********************.***************99999********************87754.558*************** PP

                            HHHHHTTESEEEESS--HHHHHH CS
           Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                            l+ +  Ga d+l Kp+ +eel++
  Traes_7AS_DECB8080D.1 109 LKGITHGACDYLLKPVRIEELRN 131
                            *********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.8E-1721608IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23006.7E-4120173No hitNo description
SuperFamilySSF521726.97E-3520146IPR011006CheY-like superfamily
SMARTSM004485.6E-3121133IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.85822137IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.4E-2323131IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.12E-2624136No hitNo description
PROSITE profilePS5129411.055199258IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-30199260IPR009057Homeodomain-like
SuperFamilySSF466891.42E-19200259IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-25202255IPR006447Myb domain, plants
PfamPF002491.1E-6204254IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MMMEARKALM ERERDQFPVG MRVLAVDDDP VCLKVLEVLL RRCQYHVTTT NQAATALRLL  60
RENKDMFDLV ISDVHMPDMD GFKLLELVGL EMDLPVIMLS VNGETKSVLK GITHGACDYL  120
LKPVRIEELR NVWQHVVRRK FCNREPNNLD FCKDSYHRLG QAICDSHRSS DQSNRARRKR  180
KELHSEEEDE GEDNDDAAAS KKPRVVWSVE LHRKFVAAVN QLGIDKAVPK RILELMNVEK  240
LTRENVASHL QKYRLYLRRL SAVASQQASV AAAFGGRDPF LHMGAFEGLH SYHQPFGPSA  300
APPSFNPHGL LSGAGATTFG LQDLASPKGI HCAGNNGEVS LQGNKHADLT QGLTASSFGQ  360
PRLQQEWIHQ ETNDLCSVFS GGALANTMRG TFQRITSSSL PPEDLLECTP HIKVGAHPSV  420
GIQNASSGLL ERSQQGALPV GDGFSVDKLP LHISFDGAIA TKLDASFVTE EQGMDQKGIF  480
SERMTVGVCP SESLIAASSG RCGASSSGST RLLPPHDTDR HSKYLQFGVA SNSRHRMDGG  540
MRQDQRLNNG DFSYDGGAIV PEQTDVYDLG ISKLQGQGAL NSSSCNFDGL LNSIVKVVRT  600
YNMLELLSLF PLKISLFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-24199261264ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176181RRKRKE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3699660.0AK369966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2102E11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190045.10.0two-component response regulator ORR22-like
SwissprotQ5SML50.0ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLA0A446X4R70.0A0A446X4R7_TRITD; Two-component response regulator
STRINGTraes_7AS_DECB8080D.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-107response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]