PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AS_F2DF86C49.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 130aa    MW: 14857.7 Da    PI: 9.6147
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AS_F2DF86C49.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP47.74.1e-1544744676
                           TSSEEETTT--SS--S-STTTT-------S- CS
                    SBP 46 CsrfhelsefDeekrsCrrrLakhnerrrkk 76
                             rfh+l efD++krsCrrrLa+hnerrrk+
  Traes_7AS_F2DF86C49.2 44 FLRFHQLPEFDQGKRSCRRRLAGHNERRRKA 74
                           569**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114114.127174IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.105.3E-44061IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.73E-124578IPR004333Transcription factor, SBP-box
PfamPF031107.8E-94673IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
DPVRFGSHNF YSVITHHTSQ VNSVEEGCTS CLNEGCTTNS LLEFLRFHQL PEFDQGKRSC  60
RRRLAGHNER RRKAPPGPLA TRYGRLAASF EEPGRFRSYL LDFSYPRVPS SVRDAWPGAR  120
LGYRMPGEIQ
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4478771e-122KF447877.1 Triticum aestivum squamosa promoter-binding-like protein 17 (SPL17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146461.11e-53squamosa promoter-binding-like protein 17
SwissprotA3C0577e-39SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLA0A3B6RDQ71e-52A0A3B6RDQ7_WHEAT; Uncharacterized protein
STRINGTraes_7AS_F2DF86C49.23e-92(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25273787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.12e-16squamosa promoter binding protein-like 9
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]