PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AS_FB2A769B5.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 364aa    MW: 40490.7 Da    PI: 7.905
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AS_FB2A769B5.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP119.12.1e-3738113277
                            -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                    SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                            Cqv+gC+adl + ++yhrrhkvCe h+k++ v ++++e+rfCqqCsrfh ++efDe+k+sCr+rLa+hn+rrrk+ 
  Traes_7AS_FB2A769B5.1  38 CQVDGCHADLGDDRDYHRRHKVCEPHTKSTLVRIRNIEHRFCQQCSRFHLVQEFDEGKKSCRSRLATHNRRRRKAP 113
                            *************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.9E-313099IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.17135112IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.32E-3536115IPR004333Transcription factor, SBP-box
PfamPF031103.5E-2838111IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
SNTAIPHERI AVRGGQIGEE EGPASAAAGA SSSSAPSCQV DGCHADLGDD RDYHRRHKVC  60
EPHTKSTLVR IRNIEHRFCQ QCSRFHLVQE FDEGKKSCRS RLATHNRRRR KAPAEAVNSL  120
GENQSLTNTL LLLLRQLAGQ DSAASSSEQI NGPNLLVSLL KNLAAVAGTQ ACQDMLKDAT  180
SSNAGNYVGN QSRPPVHAEE PPVKRRAQNF DLNDAYVEED ESRTDKIIFK LFGKQPNDFP  240
ADLRAQILNW LSHYPSDMES YIRPGCVILT IYLRLPNWMW DKLNVDPAPW IENLISISTR  300
GFWEKGWLYA RVQDHLTLSC NGRLMLVSPW QPVIGDKHQI LCVTPIAAAC NSTANFSVRG  360
FNIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-2629111184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4478810.0KF447881.1 Triticum aestivum squamosa promoter-binding-like protein 1 (SPL1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160962.10.0squamosa promoter-binding-like protein 1 isoform X2
SwissprotQ9LGU71e-166SPL1_ORYSJ; Squamosa promoter-binding-like protein 1
TrEMBLA0A3B6RCE90.0A0A3B6RCE9_WHEAT; Uncharacterized protein
TrEMBLA0A446X9530.0A0A446X953_TRITD; Uncharacterized protein
STRINGTraes_7AS_FB2A769B5.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.14e-74squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang H,Zhai J,Mo J,Li D,Song F
    Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance.
    J Integr Plant Biol, 2012. 54(9): p. 652-62
    [PMID:22889013]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Zhang H, et al.
    Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response.
    Plant Cell Rep., 2014. 33(10): p. 1745-56
    [PMID:25113543]