PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BL_1AC36A6FD.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CPP
Protein Properties Length: 485aa    MW: 52705.1 Da    PI: 7.8798
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BL_1AC36A6FD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.94.7e-145897242
                    TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
                           +kk+CnCk+s+Clk+YCeCfaag +C+  C+C++C Nk e+
  Traes_7BL_1AC36A6FD.1 58 RKKQCNCKNSHCLKLYCECFAAGLYCDG-CNCKQCGNKVEN 97
                           689*************************.********9875 PP
2TCR50.44.5e-16140179140
                    TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                            k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC dCkN e
  Traes_7BL_1AC36A6FD.1 140 KHNKGCHCKKSGCLKKYCECFQANILCSKNCKCMDCKNFE 179
                            589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011146.8E-135797IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.46858180IPR005172CRC domain
PfamPF036381.2E-105994IPR005172CRC domain
SMARTSM011146.0E-19140181IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.4E-12143178IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MEPEKQHNAQ PPAPPAAAPP QPRAVAPAHP LMHSARWPVS FTPIKPVVEI KSVTPPKRKK  60
QCNCKNSHCL KLYCECFAAG LYCDGCNCKQ CGNKVENEHA RQEAINSTKL RNPKAFQPKI  120
ENVPSTLSVR KDAGAPSVPK HNKGCHCKKS GCLKKYCECF QANILCSKNC KCMDCKNFEG  180
SEELQAIIQG DNASDKNNVQ QAANVTLNGA IGSSGYKYSP VRRKRHPEDP LGPEANHLDA  240
SQVASSSGLE GCIGYQSRSK MVYRSPLANT IHPTDVNDLA NHLVIVCRKA TETFLTIADN  300
KVEMEVERGI YTNADLNNDK MKNREVQNGG VSQPDVATHI DQRTAGDLES PCNNTQEDYR  360
PASPGTQALL CDEQGTAFGS DYRTSFPSAF YDQDTPELSA LQEKTVLTGF RDYLRLLITR  420
GKINANNSAG MTEANTSSEP AMELDARRNH GATTGPGVSS LPSEAVERPK APGGPENPRT  480
SDPSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-265918911132Protein lin-54 homolog
5fd3_B1e-265918911132Protein lin-54 homolog
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150693.10.0protein tesmin/TSO1-like CXC 5 isoform X1
TrEMBLA0A3B6SF720.0A0A3B6SF72_WHEAT; Uncharacterized protein
TrEMBLA0A446YKM90.0A0A446YKM9_TRITD; Uncharacterized protein
STRINGTraes_7BL_1AC36A6FD.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57552653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.18e-88Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]