PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7BL_1BC595AAF.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 103aa MW: 11555 Da PI: 10.5831

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7BL_1BC595AAF.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.3	8.6e-06	60	86	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++i +++ L++ +P + Traes_7BL_1BC595AAF.1 60 SHSLAERARREKITKRMKILQDPVPGC 86 8************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.49E-7	53	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.337	56	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-7	59	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
MTDTEAKCFK AHKSNDESGS FRKDVEADSR NATKAVDQNP PPQKQGFIHV RARRGQATDS 60 HSLAERARRE KITKRMKILQ DPVPGCNKVS HPLEKNSGRY LGP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may regulate jasmonate-regulated genes. {ECO:0000250\|UniProtKB:Q69WS3}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FN564434	1e-103	FN564434.1 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0954b.
GenBank	HG670306	1e-103	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020152106.1	6e-48	transcription factor bHLH79-like
Swissprot	Q84T08	4e-35	BH089_ORYSJ; Transcription factor BHLH089
TrEMBL	T1NP81	6e-49	T1NP81_TRIUA; Uncharacterized protein
STRING	Traes_7BL_1BC595AAF.1	7e-72	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3065	35	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23690.1	2e-23	bHLH family protein

Publications ? help Back to Top
Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]