PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BL_681D33525.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 207aa    MW: 21925.4 Da    PI: 8.5747
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BL_681D33525.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.2e-06732126
                           --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                           yk + C+ f+    C+yGd C+F H+
  Traes_7BL_681D33525.1  7 YKGRHCKKFYTEEGCPYGDACTFLHD 32
                           78888********************7 PP
2zf-CCCH44.42.7e-1486111126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            +kt++C+ +  tG+C++G++C+FaHg
  Traes_7BL_681D33525.1  86 WKTRICNKWEMTGYCPFGSKCHFAHG 111
                            8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.9E-9534IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-8534IPR000571Zinc finger, CCCH-type
SMARTSM003560.3633IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629634IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-1782116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-1082116IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-985112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.42285113IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-1186111IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
SVSGRAYKGR HCKKFYTEEG CPYGDACTFL HDEQSKARES VAISLSPSVG GGSYNSATAA  60
AAPPNGPATA AAASPNGPTI LKPSNWKTRI CNKWEMTGYC PFGSKCHFAH GAAELHKYGG  120
GLVDIDGRDI ASTPDSKQAT ASSKLPVETA AASTAVPPHA DVYHLGSQSQ RSALASQRSG  180
QLQRPIQKWK GPDKISRIYG DWIDETD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3733070.0AK373307.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3026K08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198349.11e-134zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ31e-104C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A3B6SJG11e-137A0A3B6SJG1_WHEAT; Uncharacterized protein
STRINGTraes_7BL_681D33525.11e-152(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.13e-64C3H family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]