PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7BL_7A3E02172.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

SRS

Protein Properties

Length: 69aa MW: 7124.98 Da PI: 4.9443

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7BL_7A3E02172.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	31.6	4.9e-10	5	68	64	126
DUF702 64 aasaaeaaskrkrelkskkqs.alsstklssaeskkeletsslPeevsseavfrcvrvssvddg 126 a++aa+ a+kr+rel + +++t ++ a++++ ++P+e+s eavfrcvr++ vd+ Traes_7BL_7A3E02172.1 5 ATAAAAVANKRPRELVRSLGRlPSATTAMVDATTSSGEGDGRFPPELSLEAVFRCVRIGPVDEP 68 444566778888888444333034445566667777778888********************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.4E-8	6	68	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 69 aa Download sequence Send to blast
NSAAATAAAA VANKRPRELV RSLGRLPSAT TAMVDATTSS GEGDGRFPPE LSLEAVFRCV 60 RIGPVDEPD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB678347	3e-39	AB678347.1 Hordeum vulgare subsp. vulgare Lks2 gene for putative short internodesfamily transcription factor, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020192925.1	4e-39	protein SHI RELATED SEQUENCE 1-like
Refseq	XP_020192926.1	4e-39	protein SHI RELATED SEQUENCE 1-like
TrEMBL	A0A3B6SKK2	2e-38	A0A3B6SKK2_WHEAT; Uncharacterized protein
STRING	Traes_7BL_7A3E02172.1	2e-41	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	8e-08	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]