PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BL_7DC689032.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 165aa    MW: 18060.5 Da    PI: 10.9022
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BL_7DC689032.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA25.12.5e-08142165122
                   GATA   1 CsnCgttk..TplWRrgpdgnktL 22 
                            C++Cgt    Tp++Rrgp+g++tL
  Traes_7BL_7DC689032.1 142 CHHCGTNAhnTPMMRRGPEGPRTL 165
                            ******9999************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.3E-11742IPR010399Tify domain
PROSITE profilePS5132015.188742IPR010399Tify domain
PfamPF062003.1E-13941IPR010399Tify domain
PROSITE profilePS5101713.33467109IPR010402CCT domain
PfamPF062033.4E-1667109IPR010402CCT domain
Gene3DG3DSA:3.30.50.105.0E-5141165IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MVSGIVPPAT GNQLTLSFQG EVYVFDSVSP DKVQAVLLLL GGRELNPGIG AGASSTPYSK  60
RLNFPHRVAS LMRFREKRKE RNFDKKIRYT VRKEVALRMQ RNRGQFTSSK PKPDDGTSEL  120
ATADGSPNWG SVEGRPPSAA ACHHCGTNAH NTPMMRRGPE GPRTL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3631600.0AK363160.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2013C24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192767.11e-114GATA transcription factor 20-like isoform X3
RefseqXP_020192768.11e-114GATA transcription factor 20-like isoform X4
SwissprotQ5Z4U51e-101GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A3B6SPR11e-119A0A3B6SPR1_WHEAT; Uncharacterized protein
STRINGTraes_7BL_7DC689032.11e-120(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.22e-58ZIM-LIKE 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]