PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7BL_7E32A8329.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-other

Protein Properties

Length: 54aa MW: 6490.53 Da PI: 9.8085

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7BL_7E32A8329.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.1	8.5e-10	8	40	22	54
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ryp+ +e+ LA++ gL+ +qV++WF N R + Traes_7BL_7E32A8329.1 8 ARYPKDHEKDMLAARSGLSRSQVSNWFINARVR 40 59*****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.398	1	44	IPR001356	Homeobox domain
SMART	SM00389	0.003	3	48	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.42E-13	8	51	IPR009057	Homeodomain-like
CDD	cd00086	3.39E-8	9	45	No hit	No description
Pfam	PF05920	2.1E-13	10	40	IPR008422	Homeobox KN domain
Gene3D	G3DSA:1.10.10.60	1.9E-17	10	50	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 54 aa Download sequence Send to blast
TDLLIPRARY PKDHEKDMLA ARSGLSRSQV SNWFINARVR LWKPMIEEMY EELK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269\|PubMed:17908157}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB546644	2e-67	AB546644.1 Triticum aestivum WBLH2-1 mRNA for BEL1-type homeodomain protein, complete cds.
GenBank	AB546645	2e-67	AB546645.1 Triticum aestivum WBLH2-2 mRNA for BEL1-type homeodomain protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020196798.1	2e-24	BEL1-like homeodomain protein 2
Swissprot	P48731	8e-20	ATH1_ARATH; Homeobox protein ATH1
TrEMBL	A0A287X7Y5	9e-27	A0A287X7Y5_HORVV; Uncharacterized protein
STRING	Traes_7BL_7E32A8329.1	9e-33	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7715	31	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32980.1	3e-22	homeobox gene 1

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Khan M, et al. Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis. Plant Physiol., 2015. 169(3): p. 2166-86 [PMID:26417006]